PhytophthoraV1, Main, Exploration, bibRecord, 000496

Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome.

Identifieur interne : 000496 ( Main/Exploration ); précédent : 000495; suivant : 000497

Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome.

Auteurs : David J. Studholme [Royaume-Uni] ; Preeti Panda [Nouvelle-Zélande] ; Eugenio Sanfuentes Von Stowasser [Chili] ; Mariela González [Chili] ; Rowena Hill [Royaume-Uni] ; Christine Sambles [Royaume-Uni] ; Murray Grant [Royaume-Uni] ; Nari M. Williams [Nouvelle-Zélande] ; Rebecca L. Mcdougal [Nouvelle-Zélande]

Source :

Molecular plant pathology [ 1364-3703 ] ; 2019.

RBID : pubmed:30390404

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN (méthodes), Chili (MeSH), Nouvelle-Zélande (MeSH), Oomycetes (génétique), Oomycetes (pathogénicité), Phylogenèse (MeSH), Phytophthora (génétique), Phytophthora (pathogénicité), Royaume-Uni (MeSH).
MESH :
- génétique : Oomycetes, Phytophthora.
- méthodes : Analyse de séquence d'ADN.
- pathogénicité : Oomycetes, Phytophthora.
- Chili, Nouvelle-Zélande, Phylogenèse, Royaume-Uni.
Wicri :
- geographic : Chili, Nouvelle-Zélande, Royaume-Uni.

English descriptors

KwdEn :
- Chile (MeSH), New Zealand (MeSH), Oomycetes (genetics), Oomycetes (pathogenicity), Phylogeny (MeSH), Phytophthora (genetics), Phytophthora (pathogenicity), Sequence Analysis, DNA (methods), United Kingdom (MeSH).
MESH :
- geographic : Chile, New Zealand, United Kingdom.
- genetics : Oomycetes, Phytophthora.
- methods : Sequence Analysis, DNA.
- pathogenicity : Oomycetes, Phytophthora.
- Phylogeny.

Abstract

Genome sequences were generated for six oomycete isolates collected from forests in Valdivia, Chile. Three of the isolates were identified morphologically as Phytophthora kernoviae, whereas two were similar to other clade 10 Phytophthora species. One isolate was tentatively identified as Nothophytophthora valdiviana based on nucleotide sequence similarity in the cytochrome oxidase 1 gene. This is the first genome sequence for this recently described genus. The genome assembly was more fragmented and contained many duplicated genes when compared with the other Phytophthora sequences. Comparative analyses were performed with genomic sequences of the P. kernoviae isolates from the UK and New Zealand. Although the potential New Zealand origin of P. kernoviae has been suggested, new isolations from Chile had cast doubt on this hypothesis. We present evidence supporting P. kernoviae as having originated in New Zealand. However, investigation of the diversity of oomycete species in Chile has been limited and warrants further exploration. We demonstrate the expediency of genomic analyses in determining phylogenetic relationships between isolates within new and often scantly represented taxonomic groups, such as Phytophthora clade 10 and Nothophytophthora. Data are available on GenBank via BioProject accession number PRJNA352331.

DOI: 10.1111/mpp.12765
PubMed: 30390404
PubMed Central: PMC6637878

Affiliations:

Chili, Nouvelle-Zélande, Royaume-Uni

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000632
to stream Main, to step Curation: 000632

Le document en format XML

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<term>New Zealand (MeSH)</term>
<term>Oomycetes (genetics)</term>
<term>Oomycetes (pathogenicity)</term>
<term>Phylogeny (MeSH)</term>
<term>Phytophthora (genetics)</term>
<term>Phytophthora (pathogenicity)</term>
<term>Sequence Analysis, DNA (methods)</term>
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<term>Oomycetes (génétique)</term>
<term>Oomycetes (pathogénicité)</term>
<term>Phylogenèse (MeSH)</term>
<term>Phytophthora (génétique)</term>
<term>Phytophthora (pathogénicité)</term>
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<front><div type="abstract" xml:lang="en">Genome sequences were generated for six oomycete isolates collected from forests in Valdivia, Chile. Three of the isolates were identified morphologically as Phytophthora kernoviae, whereas two were similar to other clade 10 Phytophthora species. One isolate was tentatively identified as Nothophytophthora valdiviana based on nucleotide sequence similarity in the cytochrome oxidase 1 gene. This is the first genome sequence for this recently described genus. The genome assembly was more fragmented and contained many duplicated genes when compared with the other Phytophthora sequences. Comparative analyses were performed with genomic sequences of the P. kernoviae isolates from the UK and New Zealand. Although the potential New Zealand origin of P. kernoviae has been suggested, new isolations from Chile had cast doubt on this hypothesis. We present evidence supporting P. kernoviae as having originated in New Zealand. However, investigation of the diversity of oomycete species in Chile has been limited and warrants further exploration. We demonstrate the expediency of genomic analyses in determining phylogenetic relationships between isolates within new and often scantly represented taxonomic groups, such as Phytophthora clade 10 and Nothophytophthora. Data are available on GenBank via BioProject accession number PRJNA352331.</div>
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<Month>04</Month>
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<Title>Molecular plant pathology</Title>
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<ArticleTitle>Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome.</ArticleTitle>
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<Abstract><AbstractText>Genome sequences were generated for six oomycete isolates collected from forests in Valdivia, Chile. Three of the isolates were identified morphologically as Phytophthora kernoviae, whereas two were similar to other clade 10 Phytophthora species. One isolate was tentatively identified as Nothophytophthora valdiviana based on nucleotide sequence similarity in the cytochrome oxidase 1 gene. This is the first genome sequence for this recently described genus. The genome assembly was more fragmented and contained many duplicated genes when compared with the other Phytophthora sequences. Comparative analyses were performed with genomic sequences of the P. kernoviae isolates from the UK and New Zealand. Although the potential New Zealand origin of P. kernoviae has been suggested, new isolations from Chile had cast doubt on this hypothesis. We present evidence supporting P. kernoviae as having originated in New Zealand. However, investigation of the diversity of oomycete species in Chile has been limited and warrants further exploration. We demonstrate the expediency of genomic analyses in determining phylogenetic relationships between isolates within new and often scantly represented taxonomic groups, such as Phytophthora clade 10 and Nothophytophthora. Data are available on GenBank via BioProject accession number PRJNA352331.</AbstractText>
<CopyrightInformation>© 2018 The Authors. Molecular Plant Pathology published by BSPP and John Wiley & Sons Ltd.</CopyrightInformation>
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<Initials>DJ</Initials>
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<AffiliationInfo><Affiliation>Jodrell Laboratory, Royal Botanic Gardens, Kew, TW9 3DS, UK.</Affiliation>
</AffiliationInfo>
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<Initials>M</Initials>
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Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome.

Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome.

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